SAL1 homologues AlphaFold2 structural models and electrostatic models

SAL1 is a drought sensing enzyme. These are protein structural models and APBS electrostatic maps across a pH range of 7.0-8.2. There are over 500 structures from representative plant sequences derived from the 1000 Plant Transcriptome Initiative TBlastN. Sequences were selected by phylogenetic reconstruction. Sequences were processed, including removal of transit peptides, using custom code and manual curation. Structures were predicted using AlphaFold2 implementation of Colabfold. Electrostatic maps were calculated using APBS.
Type
collection
Title
SAL1 homologues AlphaFold2 structural models and electrostatic models
Brief Title
SAL1 homologue structural models
Collection Type
Dataset
Access Privileges
Research School of Biology
DOI - Digital Object Identifier
10.25911/g95s-ca17
Metadata Language
English
Data Language
English
Significance Statement
Validated structural models of over 500 diverse representative plant sequences of SAL1 drought-sensing enzyme
Brief Description
SAL1 is a drought sensing enzyme. These are protein structural models and APBS electrostatic maps across a pH range of 7.0-8.2. There are over 500 structures from representative
Full Description
SAL1 is a drought sensing enzyme. These are protein structural models and APBS electrostatic maps across a pH range of 7.0-8.2. There are over 500 structures from representative plant sequences derived from the 1000 Plant Transcriptome Initiative TBlastN. Sequences were selected by phylogenetic reconstruction. Sequences were processed, including removal of transit peptides, using custom code and manual curation. Structures were predicted using AlphaFold2 implementation of Colabfold. Electrostatic maps were calculated using APBS.
Contact Email
andrew.bowerman@anu.edu.au
Principal Investigator
Em. Prof. Barry Pogson
Supervisors
Em. Prof. Barry Pogson; Dr Andrew Bowerman
Fields of Research
3102 - Bioinformatics and computational biology; 310510 - Molecular evolution
Socio-Economic Objective
269901 - Climate adaptive plants; 280101 - Expanding knowledge in the agricultural, food and veterinary sciences; 280102 - Expanding knowledge in the biological sciences
Type of Research Activity
Strategic basic research
Date of data creation
2022
Year of data publication
2026
Creator(s) for Citation
Matthew
Mortimer
Andrew
Bowerman
Barry
Pogson
Publisher for Citation
The Australian National University Data Commons
Licence Type
CC-BY-NC - Attribution-NonCommercial (Version 4.0)
Embargo Date
2026-01-01
Retention Period
7 years
Data Management Plan
No

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Number of files: 1

Size: 95.6 GB

Identifier: anudc:6461

Status: Published
Published to:
  • Australian National University
  • Australian National Data Service
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